cppp: a program to compute the Constrained Persistent Phylogeny
PIntron: A novel pipeline for gene-structure prediction based on spliced alignment of transcript sequences (ESTs and mRNAs) against a genomic sequence.
reduceLCS: a fast program to compute the approximate Longest Commons Subsequence of a set of strings.
SASC: a fast and precise tool for cancer progression inference from single-cell data.
ASGAL: a tool to discover new alternative splicing events
All my software is hosted at GitHub.