cppp: a program to compute the Constrained Persistent Phylogeny

PIntron: A novel pipeline for gene-structure prediction based on spliced alignment of transcript sequences (ESTs and mRNAs) against a genomic sequence.

reduceLCS: a fast program to compute the approximate Longest Commons Subsequence of a set of strings.

SASC: a fast and precise tool for cancer progression inference from single-cell data.

ASGAL: a tool to discover new alternative splicing events


All my software is hosted at GitHub.